Flights from New York to San Juan – Direct & connecting routes
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JFK to SJU – All flight route options from John F Kennedy International, New York, USA to Luis Munoz Marin International, Puerto Rico. These flights are operated by 5 different airlines. Fly non-stop or choose from 5 different connecting flights. The shortest flight time is 3 hours and 57 minutes. See the full flight schedule and time table, including departure times, airlines and stopover details to find the best option for you.
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New York to San Juan flights
With over 221 flights every week and 10 different airlines you have a wide range of options. You can fly non-stop to San Juan (SJU) from New York (JFK) with JetBlue Airways, Delta Air Lines or Frontier Airlines but if a stopover option suits you better you can choose to fly via Raleigh/Durham, Boston or any other of the 7 alternatives with connectiing airports.
Tip! You can also fly to San Juan from La Guardia (LGA).
New York to San Juan with JetBlue Airways
You can fly non-stop every weekday with flights departing from 5:00 am to 10:00 pm. You can also take a connecting flight via Boston or Raleigh/Durham.
With American Airlines
If you fly from New York with American Airlines you will do a stopover in Charlotte, CLT before reaching San Juan. This flight trip will take 8 hours and 14 minutes and you can fly every weekday with departures between 5:00 am and 2:00 pm. American Airlines is a member of the air alliance OneWorld.
Distance & flight times: JFK to Luis Munoz Marin International
The shortest flight time between JFK and SJU is 3 hours and 51 minutes.
Via | Total flight time | Layover time | Distance |
---|---|---|---|
Direct | 3h 51m | - | 1610 miles (2590 km) |
RDU Raleigh/Durham | 7h 5m | 1h 36m | 1871 miles (3010 km) |
BOS Boston | 8h 0m | 2h 47m | 1875 miles (3017 km) |
CLT Charlotte | 8h 14m | 3h 52m | 2027 miles (3261 km) |
STT Saint Thomas | 8h 41m | 4h 5m | 1704 miles (2742 km) |
SKB Saint Kitts | 8h 55m | - | - |
IAD Dulles | 9h 39m | 4h 25m | 1811 miles (2914 km) |
DCA Washington | 14h 59m | 4h 20m | 1779 miles (2862 km) |


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From New York to Puerto Rico
Below is a list of other destinations to Puerto Rico from John F Kennedy International with either direct flights or 1 stop connections.
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BQN Aguadilla Direct
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VQS Vieques
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CPX Culebra
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PSE Ponce Direct
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MAZ Mayaguez
From USA to San Juan
Below is a list of other cities in USA with flights to San Juan with either non-stop or connecting flights.
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DFW Dallas Direct
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ORD Chicago Direct
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ATL Atlanta Direct
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DEN Denver Direct
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MIA Miami Direct
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CLT Charlotte Direct
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LAX Los Angeles
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IAH Houston Direct
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EWR New York Direct
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MSP Minneapolis Direct