Flights from Munich to Heraklion – Direct & connecting routes
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MUC to HER – All flight route options from Munich Airport, Germany to Heraklion International Airport, Greece. These flights are operated by 14 different airlines. Fly non-stop or choose from 17 different connecting flights. The shortest flight time is 2 hours and 40 minutes. See the full flight schedule and time table, including departure times, airlines and stopover details to find the best option for you.
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Munich to Heraklion flights
There are over 22 airlines and as many as 39 flights every week to this destination. You can fly non-stop to Heraklion (HER) from Munich (MUC) with Aegean Airlines, Condor, Lufthansa, TUIfly or Discover Airlines but if a stopover option suits you better you can choose to fly via Vienna, Belgrade or any other of the 17 alternatives with connectiing airports.
Munich to Heraklion with Aegean Airlines
You can fly non-stop every weekday with flights departing between 10:00 am and 4:00 pm. You can also take a connecting flight via Athens or Thessaloniki. Aegean Airlines is a Star Alliance member.
Note Non-stop flights with Aegean Airlines will begin in Mar 2025.
With Austrian
If you fly from Munich with Austrian you will do a stopover in Vienna, VIE before reaching Heraklion. This flight trip will take 4 hours and 10 minutes and you can fly every day of the week except Mondays and Tuesday with departures at 08:00, 11:35 or 15:30. Austrian is a Star Alliance member.
Distance & flight times: Munich Airport to Heraklion International Airport
The shortest flight time between MUC and HER is 2 hours and 40 minutes.
Via | Total flight time | Layover time | Distance |
---|---|---|---|
Direct | 2h 40m | - | 1135 miles (1826 km) |
VIE Vienna | 4h 10m | 40m | 1213 miles (1952 km) |
BEG Belgrade | 4h 25m | 1h 0m | 1182 miles (1902 km) |
SOF Sofia | 4h 50m | 1h 30m | 1206 miles (1940 km) |
ATH Athens | 5h 0m | 1h 40m | 1141 miles (1836 km) |
TIA Tirana | 5h 15m | 2h 5m | 1135 miles (1826 km) |
GVA Geneva | 5h 20m | 1h 0m | 1556 miles (2504 km) |
PRG Prague | 5h 40m | 2h 0m | 1329 miles (2138 km) |
RHO Rhodes | 5h 43m | 1h 40m | 1352 miles (2175 km) |
FRA Frankfurt | 5h 59m | 1h 15m | 1508 miles (2426 km) |
SKG Thessaloniki | 6h 0m | 2h 45m | 1154 miles (1857 km) |
KGS Kos | 6h 0m | 2h 25m | 1264 miles (2034 km) |
ZRH Zurich | 6h 5m | 1h 45m | 1365 miles (2196 km) |
IST Istanbul | 6h 5m | 1h 40m | 1421 miles (2286 km) |
FCO Rome | 6h 15m | 2h 25m | 1287 miles (2071 km) |
LYS Lyon | 6h 15m | - | - |
BER Berlin | 6h 25m | 2h 35m | 1604 miles (2581 km) |
STR Stuttgart | 6h 30m | 2h 55m | 1355 miles (2180 km) |


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From Munich to Greece
Below is a list of other destinations to Greece from Munich Airport with either direct flights or 1 stop connections.
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ATH Athens Direct
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CFU Kerkyra Direct
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RHO Rhodes Direct
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SKG Thessaloniki Direct
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CHQ Chania Direct
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KGS Kos Direct
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ZTH Zakinthos Direct
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JTR Thira Direct
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JMK Mykonos Direct
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PVK Preveza Direct
From Germany to Heraklion
Below is a list of other cities in Germany with flights to Heraklion with either non-stop or connecting flights.
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FRA Frankfurt Direct
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DUS Dusseldorf Direct
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BER Berlin Direct
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STR Stuttgart Direct
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HAM Hamburg Direct
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CGN Cologne Direct
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HAJ Hanover Direct
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NUE Nuremberg Direct
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LEJ Leipzig/Halle Direct
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BRE Bremen