Flights from Panama City to San Juan – Direct & connecting routes
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PTY to SJU – All flight route options from Tocumen International, Panama to Luis Munoz Marin International, Puerto Rico. These flights are operated by 2 airlines. Fly non-stop with Copa Airlines or choose from 2 different transit flights. The shortest flight time is 2 hours and 51 minutes. See the full flight schedule and time table, including departure times, airlines and stopover details to find the best option for you.
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Panama City to San Juan flights
With over 49 flights every week and 3 different airlines you have a wide range of options. You can fly non-stop to San Juan (SJU) from Panama City (PTY) with Copa Airlines or choose a connecting flight via Medellin (MDE) or Bogota (BOG) if it suits you better.
Panama City to San Juan with Copa Airlines
You can fly non-stop every weekday with flights departing at 9:00 am, 12 noon or 6:00 pm. Copa Airlines is a Star Alliance member.
With AVIANCA
If you fly from Panama City with AVIANCA you will do a stopover in Bogota, BOG before reaching San Juan. This flight trip will take 7 hours and 30 minutes and you can fly every Tuesday or Thursday with departures at 09 in the morning or 03 in the night. AVIANCA is a Star Alliance member.
Distance & flight times: Tocumen International to Luis Munoz Marin International
The shortest flight time between PTY and SJU is 2 hours and 51 minutes.
Via | Total flight time | Layover time | Distance |
---|---|---|---|
Direct | 2h 51m | - | 1112 miles (1789 km) |
MDE Medellin | 6h 40m | 2h 31m | 1395 miles (2245 km) |
BOG Bogota | 7h 59m | 3h 30m | 1574 miles (2533 km) |


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From Panama to San Juan
We have found another destination to Puerto Rico from Tocumen International as well.