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Flights from San Jose to San Juan – Direct & connecting routes

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SJO to SJU flights and routes map SJO to SJU – All flight route options from Juan Santamaria International, Costa Rica to Luis Munoz Marin International, Puerto Rico. These flights are operated by 5 airlines. Fly non-stop with AVIANCA or choose from 4 different transit flights. The shortest flight time is 3 hours and 10 minutes. See the full flight schedule and time table, including departure times, airlines and stopover details to find the best option for you.

From
To
Costa Rica SJO Juan Santamaria San Jose, Costa Rica
Puerto Rico SJU Luis Munoz Marin , Puerto Rico
SJO
Juan Santamaria
Costa RicaSan Jose, Costa Rica
Luis Munoz Marin
Puerto RicoSan Juan, Puerto Rico
SJU
1 direct route found »
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7 routes with 1 stop found »
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Non-stop route options:

Duration

AVIANCA
Non-stop with AVIANCA. 0-1 flights per day.
Mon & Fri

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3h 10m

Mon & Fri
AVIANCA
Non-stop with AVIANCA.
3h 10m
0-1 flights per day.
Mon & Fri
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1 stop route options with the same airline:

Duration

Via Panama City PTY
1 stop with Copa Airlines. 4-5 flights per day.

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5h 47m

Via Panama City PTY
1 stop with Copa Airlines.
5h 47m
4-5 flights per day.
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Via Santo Domingo SDQ
1 stop with Asian Air. 0-1 flights per day.
Only saturdays

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5h 57m

Only saturdays
Via Santo Domingo SDQ
1 stop with Asian Air.
5h 57m
0-1 flights per day.
Only saturdays
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Via Medellin MDE
1 stop with AVIANCA. 0-1 flights per day.

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6h 07m

Via Medellin MDE
1 stop with AVIANCA.
6h 07m
0-1 flights per day.
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Via Bogota BOG
1 stop with AVIANCA. 0-1 flights per day.
Tue,Thu & Sat

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8h 00m

Tue,Thu & Sat
Via Bogota BOG
1 stop with AVIANCA.
8h 00m
0-1 flights per day.
Tue,Thu & Sat
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1 stop route options with codeshare or different airlines:

Duration

Via Panama City PTY With Iberia & Copa Airlines
CODESHARE

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5h 49m

Via Panama City PTY
5h 49m
With Iberia & Copa Airlines
CODESHARE
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Via Santo Domingo SDQ With Euroairlines & Asian Air 0-1 flights per day.
Only saturdays
CODESHARE

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5h 57m

Only saturdays
Via Santo Domingo SDQ
5h 57m
With Euroairlines & Asian Air 0-1 flights per day.
Only saturdays
CODESHARE
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Via Bogota BOG With AVIANCA & Gol 0-1 flights per day.
Tue,Thu & Sat
CODESHARE

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8h 00m

Tue,Thu & Sat
Via Bogota BOG
8h 00m
With AVIANCA & Gol 0-1 flights per day.
Tue,Thu & Sat
CODESHARE
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Find the best prices on hotels and car rental near Luis Munoz Marin

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San Jose to San Juan flights

With over 31 flights every week and 5 different airlines you have a wide range of options. You can fly non-stop to San Juan (SJU) from San Jose (SJO) with AVIANCA but if a stopover option suits you better you can choose to fly via Panama City, Santo Domingo or any other of the 4 alternatives with connectiing airports.

San Jose to San Juan with AVIANCA

AVIANCA has non-stop every Monday or Friday at 07:30. You can also take a connecting flight via Medellin or Bogota. AVIANCA is a Star Alliance member.

With Copa Airlines

If you fly from San Jose with Copa Airlines you will do a stopover in Panama City, PTY before reaching San Juan. This flight trip will take 5 hours and 47 minutes and you can fly every weekday with departures between 4:00 am and 3:00 pm. Copa Airlines is a Star Alliance member.

Distance & flight times: Juan Santamaria International to Luis Munoz Marin International

The shortest flight time between SJO and SJU is 3 hours and 10 minutes.

ViaTotal flight timeLayover timeDistance
Direct3h 10m-1357 miles (2183 km)
PTY Panama City5h 47m3h 50m1448 miles (2330 km)
SDQ Santo Domingo5h 57m1h 44m1381 miles (2222 km)
MDE Medellin6h 7m1h 22m1715 miles (2759 km)
BOG Bogota8h 0m2h 50m1887 miles (3036 km)
The flight times and layover times in the table above are approximate and may vary depending on flight number, aircraft, airline, weather, and time of day.SJO-SJU flight routesSan Jose to San Juan flight routes illustrated on a map.
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San Jose - San Juan route map and flight paths
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You can fly non-stop from San Jose (SJO) to San Juan (SJU) with AVIANCA. The flight takes approximately 3 hours and 10 minutes. If you travel with a connecting flight instead, for example via Panama City, the total flight time will be 5 hours and 47 minutes.

If you're interested in direct flights, AVIANCA is available. For flights with stopovers, Copa Airlines, Asian Air or AVIANCA is also an option.

The flight time between Juan Santamaria (SJO) and Luis Munoz Marin International (SJU) is approximately 3 hours and 10 minutes. The distance between the two airports is 1887 miles (or 3036 kilometers).

Yes, you can fly non-stop to SJU from SJO with AVIANCA.

A codeshare agreement means that cooperating airlines are able to sell seats on each other’s flights. This means that you are able to travel to more destinations than your airline of choice normally offers. Codeshare flights are also beneficial because of the seamless transits you can get with connecting flights from the same airline. The downside of choosing a codeshare flight can be that you in some cases can’t upgrade codeshare flights or use elite benefits.

A connecting or transit flight means that you reach your final destination through two or more flights – in other words a non-direct flight. You will change to a new aircraft after your first flight, this may include moving to another terminal at the airport aswell. The time required to transfer passengers and luggage between flights is called Minimum Connecting Time (MCT) and are always taken into account here on Flightroutes.com.

If you bought your whole flight on a single ticket, the airline will book you on the next available connecting flight.

With connecting flights, checked in luggage is most commonly forwarded to your final destination when buying a single ticket for both flights.

If you miss your connecting flight due to circumstances outside your control such as your first flight being delayed, you should turn to your airline who will provide you with a seat on the next available flight. This is usually done free of charge, and only applies if you purchased your trip as one ticket. If the next connecting flight is the following day, the airline usually provides accommodation and meals.
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