Flights from Saint Thomas to San Juan – Direct & connecting routes
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STT to SJU – All flight route options from Saint Thomas, US Virgin Islands to Luis Munoz Marin International, Puerto Rico. These flights are operated by 4 different airlines. Fly non-stop or choose from 2 different connecting flights. The shortest flight time is 35 minutes. See the full flight schedule and time table, including departure times, airlines and stopover details to find the best option for you.
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Saint Thomas to San Juan flights
With over 80 flights every week and 6 different airlines you have a wide range of options. You can fly non-stop to San Juan (SJU) from Saint Thomas (STT) with Cape Air, JetBlue Airways, Sun Country Airlines or Frontier Airlines or choose a connecting flight via Vieques (VQS) or Beef Island (EIS) if it suits you better.
Saint Thomas to San Juan with Cape Air
You can fly non-stop every weekday with flights departing from 7:00 am to 5:00 pm. You also have the option to do a transit flight via Vieques.
Distance & flight times: Saint Thomas to Luis Munoz Marin International
The shortest flight time between STT and SJU is 35 minutes.
Via | Total flight time | Layover time | Distance |
---|---|---|---|
Direct | 35m | - | 68 miles (109 km) |
VQS Vieques | 4h 22m | 4h 37m | 77 miles (124 km) |
EIS Beef Island | 4h 28m | 3h 18m | 125 miles (201 km) |


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From Saint Thomas to Puerto Rico
Below is a list of other destinations to Puerto Rico from Saint Thomas with either direct flights or 1 stop connections.
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VQS Vieques Direct
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MAZ Mayaguez
From US Virgin Islands to San Juan
We have found another destination to Puerto Rico from Saint Thomas as well.
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STX Saint Croix Direct