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Flights from San Diego to San Juan – Airlines & connecting routes

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SAN to SJU flights and routes map SAN to SJU – All flight route options from San Diego International Airport, California, USA to Luis Munoz Marin International, Puerto Rico. These flights are operated by 10 different airlines through 19 different connections. The shortest flight time is 8 hours and 57 minutes. See the full flight schedule and time table, including departure times, airlines and stopover details to find the best option for you.

From
To
USA SAN San Diego Airport San Diego, CA, USA
Puerto Rico SJU Luis Munoz Marin , Puerto Rico
SAN
San Diego Airport
USASan Diego, CA, USA
Luis Munoz Marin
Puerto RicoSan Juan, Puerto Rico
SJU
No direct flights found
30 routes with 1 stop found »
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1 stop route options with the same airline:

Duration

Via Chicago ORD
1 stop with United Airlines. 2-4 flights per day.

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10h 13m

Via Chicago ORD
1 stop with United Airlines.
10h 13m
2-4 flights per day.
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Via Miami MIA
1 stop with American Airlines. 2 flights per day.

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10h 17m

Via Miami MIA
1 stop with American Airlines.
10h 17m
2 flights per day.
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Via Dallas DFW
1 stop with American Airlines. 6 flights per day.

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10h 26m

Via Dallas DFW
1 stop with American Airlines.
10h 26m
6 flights per day.
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Via Orlando MCO
1 stop with Southwest Airlines. 1-3 flights per day.

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11h 15m

Via Orlando MCO
1 stop with Southwest Airlines.
11h 15m
1-3 flights per day.
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Via Dulles IAD
1 stop with United Airlines. 1-3 flights per day.

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11h 17m

Via Dulles IAD
1 stop with United Airlines.
11h 17m
1-3 flights per day.
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Via Atlanta ATL
1 stop with Delta Air Lines. 4-5 flights per day.

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11h 21m

Via Atlanta ATL
1 stop with Delta Air Lines.
11h 21m
4-5 flights per day.
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Via New York JFK
1 stop with Delta Air Lines. 1-2 flights per day.

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11h 22m

Via New York JFK
1 stop with Delta Air Lines.
11h 22m
1-2 flights per day.
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Via Dallas DAL
1 stop with Southwest Airlines. 0-2 flights per day.
Only sundays

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11h 23m

Only sundays
Via Dallas DAL
1 stop with Southwest Airlines.
11h 23m
0-2 flights per day.
Only sundays
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Via Philadelphia PHL
1 stop with American Airlines. 2 flights per day.

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11h 48m

Via Philadelphia PHL
1 stop with American Airlines.
11h 48m
2 flights per day.
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Via Charlotte CLT
1 stop with American Airlines. 2 flights per day.

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11h 58m

Via Charlotte CLT
1 stop with American Airlines.
11h 58m
2 flights per day.
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Via New York JFK
1 stop with JetBlue Airways. 2 flights per day.

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12h 03m

Via New York JFK
1 stop with JetBlue Airways.
12h 03m
2 flights per day.
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Via Baltimore BWI
1 stop with Southwest Airlines. 1-3 flights per day.

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12h 03m

Via Baltimore BWI
1 stop with Southwest Airlines.
12h 03m
1-3 flights per day.
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Via Detroit DTW
1 stop with Delta Air Lines. 0-1 flights per day.

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12h 05m

Via Detroit DTW
1 stop with Delta Air Lines.
12h 05m
0-1 flights per day.
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Via Nashville BNA
1 stop with Southwest Airlines.
Begins in 10/8

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12h 15m

Begins in 10/8
Via Nashville BNA
1 stop with Southwest Airlines.
12h 15m
Begins in 10/8
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Via Chicago ORD
1 stop with American Airlines. 0-1 flights per day.

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12h 20m

Via Chicago ORD
1 stop with American Airlines.
12h 20m
0-1 flights per day.
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Via Houston HOU
1 stop with Southwest Airlines. 0-1 flights per day.

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12h 43m

Via Houston HOU
1 stop with Southwest Airlines.
12h 43m
0-1 flights per day.
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Via Boston BOS
1 stop with JetBlue Airways. 1-2 flights per day.

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12h 52m

Via Boston BOS
1 stop with JetBlue Airways.
12h 52m
1-2 flights per day.
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Via Panama City PTY
1 stop with Copa Airlines. 0-1 flights per day.

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12h 57m

Via Panama City PTY
1 stop with Copa Airlines.
12h 57m
0-1 flights per day.
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Via New York EWR
1 stop with United Airlines. 3-6 flights per day.

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13h 05m

Via New York EWR
1 stop with United Airlines.
13h 05m
3-6 flights per day.
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Via Austin AUS
1 stop with Southwest Airlines.
Begins in 10/8

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14h 50m

Begins in 10/8
Via Austin AUS
1 stop with Southwest Airlines.
14h 50m
Begins in 10/8
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Via Houston IAH
1 stop with United Airlines. 3-4 flights per day.

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15h 47m

Via Houston IAH
1 stop with United Airlines.
15h 47m
3-4 flights per day.
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1 stop route options with codeshare or different airlines:

Duration

Via Atlanta ATL With Delta Air Lines & WestJet 0-2 flights per day.
Only saturdays
CODESHARE

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9h 46m

Only saturdays
Via Atlanta ATL
9h 46m
With Delta Air Lines & WestJet 0-2 flights per day.
Only saturdays
CODESHARE
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Via Dallas DFW With Alaska Airlines & American Airlines 6 flights per day.
CODESHARE

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10h 30m

Via Dallas DFW
10h 30m
With Alaska Airlines & American Airlines 6 flights per day.
CODESHARE
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Via Miami MIA With Alaska Airlines & American Airlines 2 flights per day.
CODESHARE

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10h 45m

Via Miami MIA
10h 45m
With Alaska Airlines & American Airlines 2 flights per day.
CODESHARE
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Via New York JFK With Alaska Airlines & Delta Air Lines 2 flights per day.

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11h 22m

Via New York JFK
11h 22m
With Alaska Airlines & Delta Air Lines 2 flights per day.
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Via Boston BOS With Alaska Airlines & Delta Air Lines
Begins in 21/8

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11h 31m

Begins in 21/8
Via Boston BOS
11h 31m
With Alaska Airlines & Delta Air Lines
Begins in 21/8
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Via Charlotte CLT With Alaska Airlines & American Airlines 2 flights per day.
CODESHARE

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12h 35m

Via Charlotte CLT
12h 35m
With Alaska Airlines & American Airlines 2 flights per day.
CODESHARE
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Via New York EWR With Alaska Airlines & United Airlines 1-2 flights per day.

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12h 37m

Via New York EWR
12h 37m
With Alaska Airlines & United Airlines 1-2 flights per day.
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Via Chicago ORD With American Airlines & United Airlines 2 flights per day.

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12h 57m

Via Chicago ORD
12h 57m
With American Airlines & United Airlines 2 flights per day.
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Via Orlando MCO With United Airlines & Azul 2-4 flights per day.
CODESHARE

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14h 10m

Via Orlando MCO
14h 10m
With United Airlines & Azul 2-4 flights per day.
CODESHARE
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Find the best prices on hotels and car rental near Luis Munoz Marin

We got great deals on hotels and car rentals near the airport.

Luis Munoz Marin HOTEL PRICES
Luis Munoz Marin CAR-RENTAL
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San Diego to San Juan flights

There are over 19 airlines and as many as 559 flights every week to this destination. While flying to San Juan from San Diego you will be doing a stopover in Miami, Dallas or any other of the 19 alternatives with flight connections.

Are there any non-stop flights from SAN to SJU?

There are no direct or non-stop flights from San Diego International Airport, SAN to Luis Munoz Marin International, SJU.

San Diego to San Juan with Delta Air Lines

If you fly to San Juan from San Diego with Delta Air Lines you will do a stopover in Atlanta. Delta Air Lines is a member of SkyTeam.

Distance & flight times: San Diego International Airport to Luis Munoz Marin International

The shortest flight time between SAN and SJU is 10 hours and 17 minutes.

ViaTotal flight timeLayover timeDistance
MIA Miami10h 17m3h 41m3326 miles (5352 km)
DFW Dallas10h 26m2h 29m3349 miles (5389 km)
IAD Dulles11h 17m2h 40m3844 miles (6185 km)
ATL Atlanta11h 21m2h 29m3454 miles (5557 km)
JFK New York11h 22m1h 13m4064 miles (6539 km)
DAL Dallas11h 23m45m3349 miles (5389 km)
PHL Philadelphia11h 48m3h 16m3966 miles (6381 km)
CLT Charlotte11h 58m4h 27m3568 miles (5741 km)
BWI Baltimore12h 3m2h 40m3879 miles (6241 km)
DTW Detroit12h 5m3h 13m3906 miles (6285 km)
BNA Nashville12h 15m1h 20m3520 miles (5664 km)
ORD Chicago12h 20m3h 20m3814 miles (6137 km)
EWR New York12h 37m3h 11m4054 miles (6523 km)
HOU Houston12h 43m4h 50m3323 miles (5347 km)
BOS Boston12h 52m2h 13m4284 miles (6893 km)
PTY Panama City12h 57m3h 47m4039 miles (6499 km)
MCO Orlando14h 10m3h 43m3351 miles (5392 km)
AUS Austin14h 50m3h 10m3323 miles (5347 km)
IAH Houston15h 47m3h 9m3323 miles (5347 km)
The flight times and layover times in the table above are approximate and may vary depending on flight number, aircraft, airline, weather, and time of day.SAN-SJU flight routesSan Diego to San Juan flight routes illustrated on a map.
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Departing from San Diego International Airport
Departing from San Diego International Airport. Copyright: San Diego International Airport
San Diego - San Juan route map and flight paths
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From San Diego to Puerto Rico

Below is a list of other destinations to Puerto Rico from San Diego International Airport with either direct flights or 1 stop connections.

From USA to San Juan

Below is a list of other cities in USA with flights to San Juan with either non-stop or connecting flights.

The fastest way to fly from San Diego (SAN) to San Juan (SJU) is via Miami and it will take about 10 hours and 17 minutes. The second fastest route is via Dallas and will take 10 hours and 26 minutes.

You can fly with American Airlines, United Airlines, Delta Air Lines, Alaska Airlines, Southwest Airlines, JetBlue Airways, Copa Airlines or Azul from San Diego to San Juan.

The flight time between San Diego Airport (SAN) and Luis Munoz Marin International (SJU) via Miami International, MIA is 10 hours and 17 minutes.

No. But you can still purchase a 1 stop flight via Miami, Dallas or any other route to San Juan (SJU).

A codeshare agreement means that cooperating airlines are able to sell seats on each other’s flights. This means that you are able to travel to more destinations than your airline of choice normally offers. Codeshare flights are also beneficial because of the seamless transits you can get with connecting flights from the same airline. The downside of choosing a codeshare flight can be that you in some cases can’t upgrade codeshare flights or use elite benefits.

A connecting or transit flight means that you reach your final destination through two or more flights – in other words a non-direct flight. You will change to a new aircraft after your first flight, this may include moving to another terminal at the airport aswell. The time required to transfer passengers and luggage between flights is called Minimum Connecting Time (MCT) and are always taken into account here on Flightroutes.com.

If you bought your whole flight on a single ticket, the airline will book you on the next available connecting flight.

With connecting flights, checked in luggage is most commonly forwarded to your final destination when buying a single ticket for both flights.

If you miss your connecting flight due to circumstances outside your control such as your first flight being delayed, you should turn to your airline who will provide you with a seat on the next available flight. This is usually done free of charge, and only applies if you purchased your trip as one ticket. If the next connecting flight is the following day, the airline usually provides accommodation and meals.
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